param.infer: param.infer

In lch14forever/BEEM: BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data

param.infer

Description

Independent function for inferring parameters with Bayesian Lasso

Usage

param.infer(
  dat,
  metadata,
  biomass,
  forceBreak = NULL,
  dev = Inf,
  ncpu = 4,
  norder = 3,
  infer_flag = TRUE
)

Arguments

dat	input data following MDSINE's OTU table
metadata	metadata following MDSINE's metadata format
biomass	biomass data following MDSINE's biomass data format
forceBreak	force to break the trajectory to handle pulsed perturbation (or species invasion) (default: NULL)
dev	deviation (dev * mad) from the median to be considered as outliers (default:Inf, no filtering)
ncpu	maximal number of CPUs used (default:4)
norder	order of spline basis (default: 3)
infer_flag	run inference (default:TRUE)

lch14forever/BEEM documentation built on April 5, 2025, 11:24 p.m.