func.E: func.E

In lch14forever/beem-static: An EM-like algorithm for biomass and microbiome model inference from cross sectional microbial profiling data

Description

E-part of BEEM, estimate model parameters with inferred m

Usage

func.E(dat.tss, external.perturbation = NULL, m, sample.filter,
  lambda.inits = NULL, ncpu = 4, ...)

Arguments

dat.tss	relative abundances matrix (each OTU in one row)
external.perturbation	external perturbation presence matrix *1/m (each perturbation in one row, each sample in one column) (Default: NULL)
m	estimated biomass values (1 X no. of samples) matrix
sample.filter	filter out samples contain outliers in Y
lambda.inits	initial lambda values
ncpu	number of CPUs (default: 4)
...	additional parameters for 'beemStatic::infer'

Author(s)

Chenhao Li, Gerald Tan, Niranjan Nagarajan

lch14forever/beem-static documentation built on Aug. 30, 2021, 4:41 p.m.