Files in lch14forever/beem-static
An EM-like algorithm for biomass and microbiome model inference from cross sectional microbial profiling data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/beem2param.r
R/beemDemo.r
R/deprecated.r
R/func.E.r
R/func.EM.r
R/func.M.r
R/normalizations.r
R/post_processing.r
R/vis.r
README.md
README.rmd
README_files/figure-gfm/unnamed-chunk-10-1.png
README_files/figure-gfm/unnamed-chunk-4-1.png
README_files/figure-gfm/unnamed-chunk-5-1.png
README_files/figure-gfm/unnamed-chunk-6-1.png
beemStatic.Rproj
data/beemDemo.rda
data/demo.n500_p20_eq1.counts.txt
data/demo.n500_p20_eq1.truth.txt
logo.png
man/auc.b.Rd
man/beem2biomass.Rd
man/beem2param.Rd
man/beemDemo.Rd
man/biomassInit.Rd
man/checkPackage.Rd
man/cluster.Rd
man/css.Rd
man/detectDiffModSamples.Rd
man/detectNonEqSamples.Rd
man/diagnoseBiomass.Rd
man/diagnoseFit.Rd
man/entropy.Rd
man/formatOutput.Rd
man/func.E.Rd
man/func.EM.Rd
man/func.M.Rd
man/infer.Rd
man/inference.Rd
man/interaction2association.Rd
man/norm.Rd
man/pcoa.Rd
man/postProcess_perturbation.Rd
man/postProcess_species.Rd
man/preProcess.Rd
man/predict.Rd
man/predict_eq.Rd
man/predict_err.Rd
man/print.Rd
man/resample.EM.Rd
man/showGrowth.Rd
man/showInteraction.Rd
man/tss.Rd
vignettes/beem_fit.png
vignettes/beem_param_wo_uncertain.png
vignettes/biomass_compare.png
vignettes/demo.r
vignettes/network.png
vignettes/param_compare.png
