clade.anno: clade.anno
In lch14forever/microbiomeViz:
Description
Usage
Arguments
Value
Author(s)
Description
annotate a ggtree plot to highlight certain clades
Usage
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clade.anno(
gtree,
anno.data,
alpha = 0.2,
anno.depth = 3,
anno.x = 10,
anno.y = 40
)
Arguments
gtree
a ggtree object
anno.data
a 2 column data.frame of annotation information. It has columns of clade name and color used for highlighting.
alpha
alpha parameter for shading
anno.depth
more specific clades will be shown on the side
anno.x
x position of annotations
anno.y
y position of annotations
Value
a ggtree object
Author(s)
Chenhao Li, Guangchuang Yu, Chenghao Zhu
lch14forever/microbiomeViz documentation built on Sept. 7, 2020, 4:34 p.m.
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Description Usage Arguments Value Author(s)
Description
annotate a ggtree plot to highlight certain clades
Usage
1 2 3 4 5 6 7 8 | clade.anno(
gtree,
anno.data,
alpha = 0.2,
anno.depth = 3,
anno.x = 10,
anno.y = 40
)
|
Arguments
gtree |
a ggtree object |
anno.data |
a 2 column data.frame of annotation information. It has columns of clade name and color used for highlighting. |
alpha |
alpha parameter for shading |
anno.depth |
more specific clades will be shown on the side |
anno.x |
x position of annotations |
anno.y |
y position of annotations |
Value
a ggtree object
Author(s)
Chenhao Li, Guangchuang Yu, Chenghao Zhu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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