lefse.lda.plot: lefse.lda.plot

In lch14forever/microbiomeViz:

Description

create a lefse LDA plot

Usage

lefse.lda.plot(
  lefse.result,
  negate.class = NULL,
  lda.threshold = NULL,
  group = NULL
)

Arguments

lefse.result	the output file from lefse
negate.class	the class to be shown on the negative side (default: everything show on the positive side)
lda.threshold	features with LDA score less than this will be removed
group	a data.frame with two columns for the subgroups of the classes (first column: the names of the features, second column: the subgroup these features belonging to)

Author(s)

Chenhao Li, Guangchuang Yu

lch14forever/microbiomeViz documentation built on Sept. 7, 2020, 4:34 p.m.