derfinderData-package: Simulated data for illustrating derfinder's functions

Description Author(s) References

Description

Reads were generated for chromosome 22 hg19 transcripts with the goal of illustrating how to use derfinder. The design is a two group comparison with 10 samples per group with 20 in each group). The package provides the fasta files as well as the resulting BAM files from aligning the reads with TopHat v2.0.9.

Author(s)

Leonardo Collado-Torres <lcollado@jhsph.edu>

References

Leonardo Collado-Torres, Alyssa Frazee, Andrew Jaffe and Jeffrey Leek (2013). derfinder: Fast differential expression analysis of RNA-seq data at base-pair resolution. https://github.com/lcolladotor/derfinder


lcolladotor/derfinderSimData documentation built on May 20, 2019, 11:28 p.m.