Man pages for lcrawlab/SINATRA
Sub Image Analysis using Topological Summary Statistics (SINATRA)
| calculate_TPR_FPR | TPR/FPR |
| clean_files | Scale & Translate Meshes |
| color.bar | Creates a color bar: |
| compute_differential_evidence | Compute a null distribution for function values on a region... |
| compute_discrete_ec_curve | Computes the EC curve relative to the shape |
| compute_marginal_likelihood | Compute Marginal Likelihood |
| compute_marginal_likelihood_gradient | Compute Marginal Likelihood Gradient |
| compute_rbf_model | Computes the RBF Kernel |
| compute_roc_curve_features | Computes the ROC curve by assessing the overlap of selected... |
| compute_roc_curve_modified_vertex | Computes the ROC curve by assessing the overlap of... |
| compute_roc_curve_teeth | Computes the averaged ROC curve of caricatured teeth. |
| compute_roc_curve_teeth_vertex | Computes the ROC curve by assessing the overlap of... |
| compute_roc_curve_vertex | Computes the ROC curve by assessing the overlap of... |
| compute_selected_faces_cones | Reconstruct Faces |
| compute_selected_vertices_cones | Reconstruct Vertices |
| compute_standardized_ec_curve | Computes the EC curve on a ball |
| convert_off_file | Convert Mesh3d File to List |
| create_comparison_matrix_mult_d | Generate design matrix from meshes in two directories.... |
| create_data_normal_fixed | Generate (S/D) EC curves for a collection of interpolations... |
| create_ec_matrix_mult_d | Create EC matrix from meshes. |
| cross | Cross Product |
| difference | Euclidean Distance |
| differentiate_ec_curve | Differentiates an EC curve |
| Elliptical_Slice_Sampling | Draw samples from posterior using Elliptical Slice Sampling |
| ExpectationPropagation | Use Expectation Propogation to Approximate mean & covariance |
| feature_vertex_association | Returns a list that displays the relation of sub-level sets... |
| find_bayesian_variables | Conducts the Bayesian Feature Selection |
| find_elastic_variables | Conducts the Lasso Feature Selection |
| find_lasso_variables | Conducts the Lasso Feature Selection |
| find_rate_variables_with_other_sampling_methods | Derive Rate Values |
| GaussKernel | Gaussian Kernel Implementation |
| generate_averaged_ROC_with_coned_directions | Generates ROC curve averaged over multiple runs. |
| generate_data_sphere_simulation | Generate (S/D) EC curves for a collection of perturbed... |
| generate_data_sphere_simulation_baseline | Generate Cooordinate Based Matrices for a collection of... |
| generate_equidistributed_cones | Generate Equidistributed Cones |
| generate_equidistributed_points | Generate Equidistributed points on a sphere |
| generate_gaussian_field | Place Gaussian Bumps on a Plane |
| generate_normal_complex_fixed | Generate Kernel interpolated meshes. |
| generate_ROC_with_coned_directions | This function generates an ROC curve using the cone... |
| get_heat_colors | Reconstructs and finds vertex colors for a set of meshes. |
| gradGaussKernel | Computes the gradient of the Gauss kernel with respect to the... |
| gradSqExpKernel | Gaussian Kernel Implementation |
| integrate_ec_curve | Integrates an EC curve |
| inv_quad | Inverse Quadratic Kernel |
| LaplaceApproximation | Use Laplace Approximation to Approximate mean & covariance |
| logistic_log_likelihood | Probit Log Likelihood |
| matrix_to_simplicial_complex | Convert 2d function to simplicial complex |
| optimize_params_EP | Pick best kernel parameters |
| probit_log_likelihood | Probit Log Likelihood |
| process_off_file_v3 | Read in OFF files to list form |
| RATE | Predictor Prioritization via RelATive cEntrality (RATE)... |
| rbf_gauss | RBF Kernel |
| rbf_on_grid | Wrapper for RBF Kernel Interpolation |
| rbf_predict | RBF prediction |
| real_data_summary | Creates Design Matrix and Run Rate |
| reconstruct_faces_on_shape | Computes the birth times of the faces on the shape. |
| reconstruct_vertices_on_shape | Computes the birth times of the vertices on the shape. |
| rodriq | Compute the directions about a cone using the rodrigues angle... |
| sigmoid | Sigmoid Transformation |
| SqExpKernel | Gaussian Kernel Implementation |
| summarize_vertices | Reconstruct Vertices in a Cone |
| update_ec_curve | Updates the EC curve |
