Man pages for ldiao/Gimp
Good-Turing and empirical Bayes pseudocounts for sparse count matrices
| avg.transform | Averaging transformation |
| dm.fit.eso | Esophageal microbiome data |
| dm.fit.lung | Lung microbiome data |
| eb.pseudo | empirical Bayes adjustment of sparse counts matrix |
| eb.pseudo.sample | empirical Bayes adjustment of sparse counts vector |
| fac.moment | calculates the first two factorial moments of a numeric... |
| gt.fit.lm | Linear model for average transformed counts |
| gt.pseudo | Good-Turing adjustment of sparse counts matrix |
| gt.pseudo.sample | Good-Turing adjustment of sparse counts vector |
| pred.mass | Good-Turing frequency estimator |
| pred.mass.smooth | Simple Good-Turing frequency estimator, smoothed |
| sim.counts | Dirichlet-multinomial counts simulation |
| sim.groups | Dirichlet-multinomial case/control counts simulation |
