dm.fit.lung: Lung microbiome data

In ldiao/Gimp: Good-Turing and empirical Bayes pseudocounts for sparse count matrices

Description

A list with 5 objects, including gamma, the parameter vector for a Dirichlet distribution. Estimated from the (non-smoker) lung data set described in Charlson ES et al.: Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011, 184:957-963. Estimated using package dirmult.

Format

A list with five objects

Details

• gamma. Parameter vector for Dirichlet distribution

• pi. Mean vector for Dirichlet distribution

• loglik. Final log-likelihood value

• ite. Number of iterations used

• theta. Estimated theta-value

ldiao/Gimp documentation built on May 20, 2019, 11:29 p.m.