Several functions for rna-seq analysis

do_PCA | Principal Component Analysis via Singular Value Decomposition |

filter_features | Filter a matrix with counts |

filter_features_by_FC | Filter features by FC |

model_cpm_counts | Linear models for cpm vs counts and counts vs cpm |

normalize_counts | Normalize counts using a normalization method + correction of... |

normalize_counts_extra | Normalization for counts matrix x |

plot_biplot | Biplot representation of a pca analysis |

plot_dendrogram | Plot a dendrogram |

plot_DEU | plot_DEU |

plot_expression | generate RLE plot |

plot_filter_diagnostic | Diagnostic plots for read filtering |

plot_PCA | Plot a PCA analysis obtained with do_PCA |

plot_Pdist | Plot distribution of P-values |

plot_RLE | generate RLE plot |

plot_tanglegram | Plot a tanglegram |

plot_Volcano | Volcano plots |

top_table | Generate dynamic table |

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