Man pages for leandroroser/PeixotoLabCode
Several functions for rna-seq analysis
| do_PCA | Principal Component Analysis via Singular Value Decomposition |
| filter_features | Filter a matrix with counts |
| filter_features_by_FC | Filter features by FC |
| model_cpm_counts | Linear models for cpm vs counts and counts vs cpm |
| normalize_counts | Normalize counts using a normalization method + correction of... |
| normalize_counts_extra | Normalization for counts matrix x |
| plot_biplot | Biplot representation of a pca analysis |
| plot_dendrogram | Plot a dendrogram |
| plot_DEU | plot_DEU |
| plot_expression | generate RLE plot |
| plot_filter_diagnostic | Diagnostic plots for read filtering |
| plot_PCA | Plot a PCA analysis obtained with do_PCA |
| plot_Pdist | Plot distribution of P-values |
| plot_RLE | generate RLE plot |
| plot_tanglegram | Plot a tanglegram |
| plot_Volcano | Volcano plots |
| top_table | Generate dynamic table |
