plot_filter_diagnostic: Diagnostic plots for read filtering

Description Usage Arguments

Description

Diagnostic plots for read filtering

Usage

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plot_filter_diagnostic(x, method = c("counts", "cpm"), threshold,
  group = NULL, as_boxplot = TRUE, facet = c("group", "value"),
  not_zero = TRUE, groups_total = FALSE)

Arguments

x

matrix with features in rows, samples in columns

method

method for analysis (counts / cpm)

threshold

value for threshold

group

grouping factor

as_boxplot

generate boxplots?

facet

facet variable

non_zero

delete variables without counts for any observation?


leandroroser/PeixotoLabCode documentation built on May 17, 2019, 7:30 p.m.