h5v_import_vcf_sparse: vcf_2_h5Variant
In leandroroser/h5Variant: HDF5 infrastructure for Variant data

Description Usage Author(s)

...

h5v_import_vcf_sparse(data, index = NULL, output = sprintf("%s.h5",
  gsub("\\.vcf.*$", "", data)), map_name = sprintf("%s.bed",
  gsub("\\.vcf.*$", "", data)), readblock = 1e+05, chunksize = 10000,
  overwrite = FALSE, genome = "hg19", default_value = "0/0",
  encoded_as = "H5T_NATIVE_USHORT")

Leandro Roser learoser@gmail.com

leandroroser/h5Variant documentation built on May 8, 2019, 3:14 a.m.

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