Files in leerichardson/spew
SPEW Framework for Generating Synthetic Ecosystems
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/add_characteristics.R
R/assign_place.R
R/check.R
R/diags.R
R/extra-docs.R
R/format.R
R/ipf.R
R/logfiles.R
R/mm.R
R/package-doc.R
R/places.R
R/read.R
R/sample-locations.R
R/sample-people.R
R/schools.R
R/spew.R
R/summarize_spew.R
R/workplaces.R
README.md
cran-comments.md
data-raw/acs-tables.R
data-raw/diags.R
data-raw/format_sd_tables.R
data-raw/get_sd_tables.R
data-raw/read-delaware.R
data-raw/read-ipums.R
data-raw/reduce-extdata-size.R
data-raw/us-diags.R
data/delaware.rda
data/tartanville.rda
data/uruguay.rda
data/us.rda
data/us_pums_sf.rda
doc/ecosystems/spew_1.2.0/spew_documentation.aux
doc/ecosystems/spew_1.2.0/spew_documentation.bbl
doc/ecosystems/spew_1.2.0/spew_documentation.blg
doc/ecosystems/spew_1.2.0/spew_documentation.log
doc/ecosystems/spew_1.2.0/spew_documentation.pdf
doc/ecosystems/spew_1.2.0/spew_documentation.tex
doc/ecosystems/spew_1.2.0/spew_documentation.toc
doc/ecosystems/spew_1.2.0/spew_refs.bib
doc/ecosystems/spew_1.3.0/spew_documentation.aux
doc/ecosystems/spew_1.3.0/spew_documentation.bbl
doc/ecosystems/spew_1.3.0/spew_documentation.blg
doc/ecosystems/spew_1.3.0/spew_documentation.log
doc/ecosystems/spew_1.3.0/spew_documentation.pdf
doc/ecosystems/spew_1.3.0/spew_documentation.tex
doc/ecosystems/spew_1.3.0/spew_documentation.toc
doc/ecosystems/spew_1.3.0/spew_refs.bib
doc/process/spew-process.Rmd
doc/process/spew-process.html
inst/extdata/10/input/counts/natstat/2010/tract/households.csv
inst/extdata/10/input/lookup/natstat/2010/tract/lookup10.csv
inst/extdata/10/input/marginals/natstat/2014/tract/DE-001_HHHAge.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-001_HHHRace.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-001_HHInc.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-001_HHSize.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-003_HHHAge.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-003_HHHRace.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-003_HHInc.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-003_HHSize.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-005_HHHAge.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-005_HHHRace.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-005_HHInc.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/DE-005_HHSize.RDS
inst/extdata/10/input/marginals/natstat/2014/tract/marginals.RDS
inst/extdata/10/input/pums/natstat/2013/puma/ss13hde.csv
inst/extdata/10/input/pums/natstat/2013/puma/ss13pde.csv
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.cpg
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.dbf
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.prj
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.shp
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.shp.ea.iso.xml
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.shp.iso.xml
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.shp.xml
inst/extdata/10/input/roads/natstat/2010/county/tl_2015_10001_roads.shx
inst/extdata/10/input/schools/natstat/2013/county/private_10.csv
inst/extdata/10/input/schools/natstat/2013/county/public_10.csv
inst/extdata/10/input/shapefiles/natstat/2010/tract/tl_2010_10_tract10.dbf
inst/extdata/10/input/shapefiles/natstat/2010/tract/tl_2010_10_tract10.prj
inst/extdata/10/input/shapefiles/natstat/2010/tract/tl_2010_10_tract10.shp
inst/extdata/10/input/shapefiles/natstat/2010/tract/tl_2010_10_tract10.shx
inst/extdata/10/input/workplaces/natstat/2009/county/us.workplaces_2009_10.csv
inst/extdata/test_data/42/marginals/marg_us.RDS
inst/extdata/test_data/42/output/output_101/eco/household_42003000001.csv
inst/extdata/test_data/42/output/output_101/eco/household_42003000002.csv
inst/extdata/test_data/42/output/output_101/eco/household_42005000001.csv
inst/extdata/test_data/42/output/output_101/eco/people_42003000001.csv
inst/extdata/test_data/42/output/output_101/eco/people_42003000002.csv
inst/extdata/test_data/42/output/output_101/eco/people_42005000001.csv
inst/extdata/test_data/vatican/output/output_1/eco/household_chair.csv
inst/extdata/test_data/vatican/output/output_1/eco/people_chair.csv
inst/extdata/test_data/vatican/output/output_2/eco/household_conclave.csv
inst/extdata/test_data/vatican/output/output_2/eco/people_conclave.csv
inst/extdata/ury/input/counts/geohive/2011/1/uruguay_revised.csv
inst/extdata/ury/input/counts/geohive/2011/2/uruguay_admin.csv
inst/extdata/ury/input/pums/ipums/2011/1/uruguay.csv
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm0.cpg
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm0.csv
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm0.dbf
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm0.prj
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm0.shp
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm0.shx
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm1.cpg
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm1.csv
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm1.dbf
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm1.prj
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm1.shp
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm1.shx
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm2.cpg
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm2.csv
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm2.dbf
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm2.prj
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm2.shp
inst/extdata/ury/input/shapefiles/gadm/2015/3/URY_adm2.shx
inst/extdata/ury/input/shapefiles/gadm/2015/3/license.txt
inst/extdata/ury/input/shapefiles/ipums/2011/1/uruguay.dbf
inst/extdata/ury/input/shapefiles/ipums/2011/1/uruguay.shp
inst/extdata/ury/input/shapefiles/ipums/2011/1/uruguay.shx
inst/extdata/ury/input/shapefiles/ipums/2011/1/uruguay_revised.dbf
inst/extdata/ury/input/shapefiles/ipums/2011/1/uruguay_revised.shp
inst/extdata/ury/input/shapefiles/ipums/2011/1/uruguay_revised.shx
inst/rmd/images/SPEW.jpg
man/add_char_demo.Rd
man/add_characteristic.Rd
man/align_pums.Rd
man/allocate_count.Rd
man/assign_place.Rd
man/assign_place_coords.Rd
man/assign_schools.Rd
man/assign_schools_inner.Rd
man/assign_weights.Rd
man/assign_workplaces.Rd
man/assign_workplaces_inner.Rd
man/base_map_theme.Rd
man/calc_dists.Rd
man/call_spew.Rd
man/cap_default.Rd
man/ccount.Rd
man/checkDF.Rd
man/check_logfile.Rd
man/check_path.Rd
man/check_place_ids.Rd
man/check_pop_table.Rd
man/check_puma_ids.Rd
man/check_pums.Rd
man/check_shapefile.Rd
man/check_var_names.Rd
man/clean_names.Rd
man/combine_counts.Rd
man/create_column.Rd
man/delaware.Rd
man/demo_sample.Rd
man/euclidean_dist.Rd
man/extract_st_co_tr.Rd
man/extrapolate_probs_to_pums.Rd
man/extrapolate_probs_to_pums_joint.Rd
man/fill_cont_table.Rd
man/fips_to_name.Rd
man/format_data.Rd
man/get_base_map.Rd
man/get_centers.Rd
man/get_coords_scaled.Rd
man/get_data_group.Rd
man/get_dfs.Rd
man/get_dist_mat.Rd
man/get_dists.Rd
man/get_envs.Rd
man/get_filenames.Rd
man/get_header.Rd
man/get_level.Rd
man/get_pop_totals.Rd
man/get_rows.Rd
man/get_shapefile_indices.Rd
man/get_targets.Rd
man/get_total_time.Rd
man/get_weight_dists.Rd
man/haversine.Rd
man/haversine_dist.Rd
man/impute_missing_vals.Rd
man/make_ipf_obj.Rd
man/make_mm_obj.Rd
man/merge_reduce.Rd
man/organize_summaries.Rd
man/people_to_households.Rd
man/plot_agents.Rd
man/plot_bds.Rd
man/plot_characteristic_proportions.Rd
man/plot_env.Rd
man/plot_interior.Rd
man/plot_labs.Rd
man/plot_pop_totals.Rd
man/plot_region.Rd
man/plot_roads.Rd
man/plot_syneco.Rd
man/print_region_list.Rd
man/read_data.Rd
man/read_marginals.Rd
man/read_moments.Rd
man/read_pop_table.Rd
man/read_roads.Rd
man/read_shapespatial_to_ogr.Rd
man/remove_count.Rd
man/remove_excess.Rd
man/remove_holes.Rd
man/remove_words.Rd
man/replace_word.Rd
man/samp_roads.Rd
man/sample_households.Rd
man/sample_ipf.Rd
man/sample_locations.Rd
man/sample_locations_roads.Rd
man/sample_locations_uniform.Rd
man/sample_mm.Rd
man/sample_people.Rd
man/sample_uniform.Rd
man/sample_with_cont.Rd
man/solve_mm_for_joint.Rd
man/solve_mm_for_var.Rd
man/solve_mm_weights.Rd
man/spew-package.Rd
man/spew.Rd
man/spew_mc.Rd
man/spew_mpi.Rd
man/spew_place.Rd
man/spew_seq.Rd
man/spew_sock.Rd
man/spewlog_to_df.Rd
man/standardize_pop_table.Rd
man/subset_pums.Rd
man/subset_schools.Rd
man/subset_shapes_roads.Rd
man/summarize_environment.Rd
man/summarize_features.Rd
man/summarize_spew.Rd
man/summarize_spew_out.Rd
man/summarize_spew_region.Rd
man/summarize_syneco.Rd
man/summarize_top_region.Rd
man/tartanville.Rd
man/update_freqs.Rd
man/uruguay.Rd
man/us.Rd
man/us_pums_sf.Rd
man/verify_column.Rd
man/weight_dists.Rd
man/weight_dists2.Rd
man/weight_dists_C.Rd
man/weight_dists_D.Rd
man/write_data.Rd
man/write_pop_table.Rd
man/write_schools.Rd
man/write_workplaces.Rd
olympus/call_spew/SPEW.py
olympus/call_spew/call_spew.sh
olympus/call_spew/run_spew.R
olympus/call_spew/spew.sh
olympus/call_spew/spew_mpi.sh
olympus/data/acs-tables/format_sd_tables.R
olympus/data/acs-tables/get_sd_tables.R
olympus/data/spew_1.3.0_fixes/move_data.bash
olympus/data/spew_1.3.0_fixes/prep_burkina_faso.R
olympus/data/spew_1.3.0_fixes/prep_canada.R
olympus/data/spew_1.3.0_fixes/prep_country.R
olympus/data/spew_1.3.0_fixes/prep_guinea.R
olympus/data/spew_1.3.0_fixes/prep_kyrgyzstan.R
olympus/data/spew_1.3.0_fixes/prep_palestine.R
olympus/data/spew_1.3.0_fixes/prep_sierra_leone.R
olympus/logfiles/check_logfiles.R
olympus/logfiles/get_logfiles.py
olympus/misc/montreal/add_smoking_montreal.R
olympus/misc/montreal/sample-env-locations.R
olympus/misc/plots/all-four-plots.R
olympus/misc/plots/plot-runtime-methods.R
olympus/misc/plots/run_results.rds
olympus/misc/plots/runtime-methods.R
olympus/misc/stat_tests/chisq.R
olympus/misc/stat_tests/qsub_stat_us.sh
olympus/misc/stat_tests/stat_tests.R
olympus/misc/stat_tests/test_state.R
olympus/move_file.bash
olympus/move_to_olympus.bash
olympus/reports/#ipums_diags_beg.Rmd#
olympus/reports/diags_report.Rmd
olympus/reports/figure/SPEW.jpg
olympus/reports/figure/unnamed-chunk-2-1.png
olympus/reports/images/SPEW.jpg
olympus/reports/ipums_diags.Rmd
olympus/reports/ipums_diags_beg.Rmd
olympus/reports/make_ipums_report.sh
olympus/reports/make_tract_report.sh
olympus/reports/make_us_report.sh
olympus/reports/qsub_ipums.sh
olympus/reports/qsub_state_tract.sh
olympus/reports/qsub_us.sh
olympus/reports/qsub_us_large.sh
olympus/reports/run_ipums.sh
olympus/reports/run_state_tracts.sh
olympus/reports/run_us_diags.sh
olympus/reports/test.sh
olympus/reports/us_diags.Rmd
olympus/reports/us_diags_42.html
olympus/reports/us_diags_beg.Rmd
olympus/reports/us_diags_beg[woven].md
olympus/reports/us_diags_beg[woven][exported].html
olympus/reports/us_diags_tracts.Rmd
olympus/sample-priv-schools.R
olympus/spew_hierarchy/.moving_data.R.swo
olympus/spew_hierarchy/country_hierarchies/usa_lookup.csv
olympus/spew_hierarchy/generate_hierarchy.R
olympus/spew_hierarchy/move_input.bash
olympus/spew_hierarchy/move_ipums.R
olympus/spew_hierarchy/move_usa.R
olympus/spew_hierarchy/spew_hierarchy.R
olympus/spew_hierarchy/spew_hierarchy.csv
olympus/spew_interactive.R
spew.Rproj
tests/testthat.R
tests/testthat/test-characteristics.R
tests/testthat/test-check.R
tests/testthat/test-diags.R
tests/testthat/test-format.R
tests/testthat/test-ipf.R
tests/testthat/test-locations.R
tests/testthat/test-parallel.R
tests/testthat/test-places.R
tests/testthat/test-read.R
tests/testthat/test-sampling.R
tests/testthat/test-schools.R
tests/testthat/test-spew.R
tests/testthat/test-summarize-spew.R
tests/testthat/test-workplaces.R
vignettes/spew-quickstart.Rmd
vignettes/spew-too.png
