Files in lehner-lab/abetadms

Analysis scripts for processing Abeta DMS data

R/abetadms.R R/abetadms_AB42_structure_propensities.R R/abetadms_PWI_heatmaps.R R/abetadms__AB42_structure_propensity_plot.R R/abetadms__aa_properties.R R/abetadms__aa_properties_pca.R R/abetadms__aa_properties_pca_doubles_loadings.R R/abetadms__aa_properties_pca_singles_loadings.R R/abetadms__aa_properties_singles_loadings.R R/abetadms__create_dir.R R/abetadms__datatable_to_matrix.R R/abetadms__fitness_lm_summary.R R/abetadms__format_dir.R R/abetadms__ggpairs_binhex.R R/abetadms__glm_prenorm.R R/abetadms__load_fitness.R R/abetadms__plot_fitness_distributions.R R/abetadms__plot_fitness_vs_position.R R/abetadms__plot_loadings.R R/abetadms__run_bayesian_double_fitness.R R/abetadms__single_mutant_heatmap.R R/abetadms__tile_heatmap_wrapper.R R/abetadms_aa_properties_mutant_effects.R R/abetadms_agg_tools_mutant_effects.R R/abetadms_combine_fitness.R R/abetadms_epistasis_analysis.R R/abetadms_fitness_model_summary.R R/abetadms_human_disease_mutations.R R/abetadms_preprocess_fitness.R R/abetadms_quality_control.R R/abetadms_secondary_structure_predictions.R R/abetadms_single_mutant_heatmaps.R R/abetadms_wt_helix_propensity.R README.md man/abetadms.Rd man/abetadms_AB42_structure_propensities.Rd man/abetadms_PWI_heatmaps.Rd man/abetadms__AB42_structure_propensity_plot.Rd man/abetadms__aa_properties.Rd man/abetadms__aa_properties_pca.Rd man/abetadms__aa_properties_pca_doubles_loadings.Rd man/abetadms__aa_properties_pca_singles_loadings.Rd man/abetadms__aa_properties_singles_loadings.Rd man/abetadms__create_dir.Rd man/abetadms__datatable_to_matrix.Rd man/abetadms__fitness_lm_summary.Rd man/abetadms__format_dir.Rd man/abetadms__ggpairs_binhex.Rd man/abetadms__glm_prenorm.Rd man/abetadms__load_fitness.Rd man/abetadms__plot_fitness_distributions.Rd man/abetadms__plot_fitness_vs_position.Rd man/abetadms__plot_loadings.Rd man/abetadms__run_bayesian_double_fitness.Rd man/abetadms__single_mutant_heatmap.Rd man/abetadms__tile_heatmap_wrapper.Rd man/abetadms_aa_properties_mutant_effects.Rd man/abetadms_agg_tools_mutant_effects.Rd man/abetadms_combine_fitness.Rd man/abetadms_epistasis_analysis.Rd man/abetadms_fitness_model_summary.Rd man/abetadms_human_disease_mutations.Rd man/abetadms_preprocess_fitness.Rd man/abetadms_quality_control.Rd man/abetadms_secondary_structure_predictions.Rd man/abetadms_single_mutant_heatmaps.Rd man/abetadms_wt_helix_propensity.Rd