abetadms_wt_helix_propensity: abetadms_wt_helix_propensity

Description Usage Arguments Value

View source: R/abetadms_wt_helix_propensity.R

Description

Hydrophobicity of WT and fitness hotspot line plot.

Usage

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abetadms_wt_helix_propensity(fitness_dt, outpath, aaprop_file,
  aaprop_file_selected, wtfasta_path, colour_scheme, execute = TRUE)

Arguments

fitness_dt

data.table with single and double mutant fitness values and their mutant effects from AA PCA (required)

outpath

output path for plots and saved objects (required)

aaprop_file

path to amino acid properties file (required)

aaprop_file_selected

path to file with selected subset of identifiers

wtfasta_path

path to WT FASTA sequence file (required)

colour_scheme

colour scheme file (required)

execute

whether or not to execute the analysis (default: TRUE)

Value

Nothing


lehner-lab/abetadms documentation built on April 16, 2020, 11:50 a.m.