abetadms: abetadms

In lehner-lab/abetadms: Analysis scripts for processing Abeta DMS data

Description

Main analysis script.

Usage

abetadms(startStage = 1, stopStage = 0,
  base_dir = "/nfs/users/project/prj004631/afaure/DMS/Results/abetadms_proj_bdf",
  DMS2structure_path = "/users/blehner/afaure/DMS/Code/DMS2structure",
  bayesian_double_fitness = F, rerun_epistasis = F,
  rerun_structure = F, numCores = 10)

Arguments

startStage	Start at a specified analysis stage (default:1)
stopStage	Stop at a specified analysis stage (default:0 i.e. no stop condition)
base_dir	Base directory for all output file (default:NB private CRG server path; change accordingly)
DMS2structure_path	Path to DMS2structure repository (default:NB private CRG server path; change accordingly)
bayesian_double_fitness	Estimate fitness of double mutants using bayesian framework (default:F)
rerun_epistasis	re-run epistasis analysis? (default:F)
rerun_structure	re-run structure analysis? (default:F)
numCores	Number of available CPU cores (default:10)

Value

Nothing

lehner-lab/abetadms documentation built on April 16, 2020, 11:50 a.m.