Man pages for lehner-lab/abetadms
Analysis scripts for processing Abeta DMS data
| abetadms | abetadms |
| abetadms__aa_properties | abetadms__aa_properties |
| abetadms_aa_properties_mutant_effects | abetadms_aa_properties_mutant_effects |
| abetadms__aa_properties_pca | abetadms__aa_properties_pca |
| abetadms__aa_properties_pca_doubles_loadings | abetadms__aa_properties_pca_doubles_loadings |
| abetadms__aa_properties_pca_singles_loadings | abetadms__aa_properties_pca_singles_loadings |
| abetadms__aa_properties_singles_loadings | abetadms__aa_properties_singles_loadings |
| abetadms_AB42_structure_propensities | abetadms_AB42_structure_propensities |
| abetadms__AB42_structure_propensity_plot | abetadms__AB42_structure_propensity_plot |
| abetadms_agg_tools_mutant_effects | abetadms_agg_tools_mutant_effects |
| abetadms_combine_fitness | abetadms_combine_fitness |
| abetadms__create_dir | abetadms__create_dir |
| abetadms__datatable_to_matrix | abetadms__datatable_to_matrix |
| abetadms_epistasis_analysis | abetadms_epistasis_analysis |
| abetadms__fitness_lm_summary | abetadms__fitness_lm_summary |
| abetadms_fitness_model_summary | abetadms_fitness_model_summary |
| abetadms__format_dir | abetadms__format_dir |
| abetadms__ggpairs_binhex | abetadms__ggpairs_binhex |
| abetadms__glm_prenorm | abetadms__glm_prenorm |
| abetadms_human_disease_mutations | abetadms_human_disease_mutations |
| abetadms__load_fitness | abetadms__load_fitness |
| abetadms__plot_fitness_distributions | abetadms__plot_fitness_distributions |
| abetadms__plot_fitness_vs_position | abetadms__plot_fitness_vs_position |
| abetadms__plot_loadings | abetadms__plot_loadings |
| abetadms_preprocess_fitness | abetadms_preprocess_fitness |
| abetadms_PWI_heatmaps | abetadms_PWI_heatmaps |
| abetadms_quality_control | abetadms_quality_control |
| abetadms__run_bayesian_double_fitness | abetadms__run_bayesian_double_fitness |
| abetadms_secondary_structure_predictions | abetadms_secondary_structure_predictions |
| abetadms__single_mutant_heatmap | abetadms__single_mutant_heatmap |
| abetadms_single_mutant_heatmaps | abetadms_single_mutant_heatmaps |
| abetadms__tile_heatmap_wrapper | abetadms__tile_heatmap_wrapper |
| abetadms_wt_helix_propensity | abetadms_wt_helix_propensity |
