filter.allele_ages | Filter allele_ages by quality of tree |
get.allele_ages | Compile allele ages file |
get_hap_matrix | Get haplotype matrix (L x N) |
PolyTest | Test for evidence of polygenic selection |
PolyTest_Init | Initialise polygenic selection test |
PolyTest_ResampleSNPs | Resample selection p-values |
read.avg_rate | Parse average rate file |
read.coal | Parse coal file |
read.freq | Parse freq file |
read.haps | Parse haps file |
read.lin | Parse lin file |
read.mut | Parse mut file |
read.qual | Parse qual file |
read.sample | Parse sample file |
read.sele | Parse sele file |
relater | relater |
timesTwo | Multiply a number by two |
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