Description Usage Arguments Value Examples
View source: R/manipulate_sele.R
This function filters out selection pvalues on bad trees using summary statistics on tree quality stored in qual.
1 | filter.allele_ages(allele_ages, qual)
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allele_ages |
data.table. Obtained from get.allele_ages() |
qual |
data.frame. qual file |
Returns a data table.
1 2 3 4 5 6 7 8 9 | # get allele ages
mut <- read.mut(system.file("extdata/example.mut.gz", package = "relater"), CHR = 1)
sele <- read.sele(system.file("extdata/example.sele.gz", package = "relater"), CHR = 1)
freq <- read.freq(system.file("extdata/example.freq.gz", package = "relater"), CHR = 1)
allele_ages <- get.allele_ages(mut, freq, sele)
# read quality file
qual <- read.qual(system.file("extdata/example.qual.gz", package = "relater"), CHR = 1)
filter.allele_ages(allele_ages, qual)
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