metric.values.bugs: Calculate metric values, Bugs

In leppott/BioMonTools: Tools for Biomonitoring and Bioassessment

Calculate metric values, Bugs

Description

Subfunction of metric.values for use with Benthic Macroinvertebrates

Usage

metric.values.bugs(
  myDF,
  MetricNames = NULL,
  boo.Adjust = FALSE,
  cols2keep = NULL,
  MetricSort = NA,
  boo.marine = FALSE,
  boo.Shiny,
  verbose,
  metric_subset,
  taxaid_dni = NULL
)

Arguments

myDF	Data frame of taxa.
MetricNames	Optional vector of metric names to be returned.
boo.Adjust	Optional boolean value on whether to perform adjustments of values prior to scoring. Default = FALSE but may be TRUE for certain metrics.
cols2keep	Column names of fun.DF to retain in the output. Uses column names.
MetricSort	How metric names should be sort; NA = as is , AZ = alphabetical. Default = NULL.
boo.marine	Should estuary/marine metrics be included. Ignored if fun.MetricNames is not null. Default = FALSE.
boo.Shiny	Boolean value for if the function is accessed via Shiny. Default = FALSE.
verbose	Include messages to track progress. Default = FALSE
metric_subset	Subset of metrics to be generated. Internal function. Default = NULL
taxaid_dni	Taxa names to be included in DNI (Do Not Include) metrics (n = 3) but dropped for all other metrics. Only for benthic metrics. Default = NULL

Details

For internal use only. Called from metric.values().

Value

Data frame

leppott/BioMonTools documentation built on March 1, 2025, 7:18 a.m.