leppott/CASTfxn
Functions for Causal Assessment Screening Tool (CAST)

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Files in leppott/CASTfxn
Functions for Causal Assessment Screening Tool (CAST)

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
NEWS.rmd R/CASTfxn.R R/data.R R/getBioMatches.R R/getBioStressorResponses.R R/getChemDataSubsets.R R/getClusterInfo.R R/getCoOccur.R R/getElev.R R/getReport.R R/getSSDplot.R R/getSiteInfo.R R/getStressorList.R R/getVerifiedPredictions.R R/runShinyExample.R README.md
data-raw/AZ/AZ data 20181218/AZAlgaeCountsFinal.tab
data-raw/AZ/AZ data 20181218/AZAlgaeMetrics.tab
data-raw/AZ/AZ data 20181218/AZAlgalMasterTaxa.tab
data-raw/AZ/AZ data 20181218/AZBenthicCountsFinal.tab
data-raw/AZ/AZ data 20181218/AZBenthicMasterTaxa.tab
data-raw/AZ/AZ data 20181218/AZBenthicMetricsFinal.tab
data-raw/AZ/AZ data 20181218/AZBenthicRelAbund.tab
data-raw/AZ/AZ data 20181218/AZChemDataFinal.tab
data-raw/AZ/AZ data 20181218/AZChemInfoFinal.tab
data-raw/AZ/AZ data 20181218/AZHabitatDataFinal.tab
data-raw/AZ/AZ data 20181218/AZHabitatParamsFinal.tab
data-raw/AZ/AZ data 20181218/AZImpairments.tab
data-raw/AZ/AZ data 20181218/AZSiteSummary.tab
data-raw/AZ/AZ data 20181218/AZSitesFinal.tab
data-raw/AZ/AZ data 20181218/AZ_ClustersHiElev.txt
data-raw/AZ/AZ data 20181218/AZ_ClustersLowElev.txt
data-raw/AZ/AZ data 20181218/AZ_WQD_FY_ALL.xlsx
data-raw/AZ/AZCoOccurData_HI.tab
data-raw/AZ/AZCoOccurData_LO.tab
data-raw/GIS/AZ_flow_HI.RDA
data-raw/GIS/AZ_flow_LO.RDA
data-raw/GIS/state/AZ_State.cpg
data-raw/GIS/state/AZ_State.dbf
data-raw/GIS/state/AZ_State.prj
data-raw/GIS/state/AZ_State.sbn
data-raw/GIS/state/AZ_State.sbx
data-raw/GIS/state/AZ_State.shp
data-raw/GIS/state/AZ_State.shp.xml
data-raw/GIS/state/AZ_State.shx
data-raw/GPlot119Source.xls
data-raw/ProcessData_AZ_303d.R data-raw/ProcessData_AZ_AlgMasterTaxa.R data-raw/ProcessData_AZ_AlgMetrics.R data-raw/ProcessData_AZ_Algcounts.R data-raw/ProcessData_AZ_BMIMasterTaxa.R data-raw/ProcessData_AZ_BMIMetrics.R data-raw/ProcessData_AZ_BMIRelAbund.R data-raw/ProcessData_AZ_BMIcounts.R data-raw/ProcessData_AZ_Chem.R data-raw/ProcessData_AZ_ChemInfo.R data-raw/ProcessData_AZ_Cluster_Hi.R data-raw/ProcessData_AZ_Cluster_Lo.R data-raw/ProcessData_AZ_ReachMod.R data-raw/ProcessData_AZ_SampSummary.R data-raw/ProcessData_AZ_Sites.R data-raw/ProcessData_CoOccur.R data-raw/ProcessData_GIS_AZ_Flow.R data-raw/ProcessData_GIS_AZ_Outline.R data-raw/ProcessData_SMC_Sites.R data-raw/ProcessData_SSD.R
data-raw/SMC/SMCSitesFinal.tab
data-raw/data_CoOccur.7z
data-raw/data_CoOccur.tsv
data-raw/data_SSD.csv
data-raw/data_SSD_generator.csv
data-raw/data_SSD_permethrin.csv
data/data_303d.rda
data/data_AlgMasterTaxa.rda
data/data_AlgMetrics.rda
data/data_Algcounts.rda
data/data_BMIMasterTaxa.rda
data/data_BMIMetrics.rda
data/data_BMIRelAbund.rda
data/data_BMIcounts.rda
data/data_Chem.rda
data/data_ChemInfo.rda
data/data_Cluster_Hi.rda
data/data_Cluster_Lo.rda
data/data_CoOccur_AZ_Hi.rda
data/data_CoOccur_AZ_Lo.rda
data/data_CoOccur_CA.rda
data/data_GIS_AZ_Outline.rda
data/data_GIS_Flow_HI.rda
data/data_GIS_Flow_LO.rda
data/data_ReachMod.rda
data/data_SSD.rda
data/data_SSD_generator.rda
data/data_SSD_permethrin.rda
data/data_SampSummary.rda
data/data_Sites.rda
data/df.sites.map.rda
inst/extdata/901SJSJC9.CoOccurrence_Scores_20180802_123825.tsv
inst/extdata/901SJSJC9_CoOccurrence_20180802_123825.pdf
inst/extdata/901SJSJC9_CoOccurrence_DO.jpg
inst/extdata/AZ_Elev.tsv
inst/extdata/_WishList.txt
inst/rmd/Map_Leaflet.R inst/rmd/Map_Leaflet.rmd inst/rmd/Report_Results_overall.rmd
inst/rmd/Report_Results_summary.html
inst/rmd/Report_Results_summary.rmd
inst/shiny-examples/CAST_AZ/data/data.Stations.LookUp.tab
inst/shiny-examples/CAST_AZ/external/getCoOccurDataset.R inst/shiny-examples/CAST_AZ/external/getTimeSeq.R inst/shiny-examples/CAST_AZ/external/getWoE.R inst/shiny-examples/CAST_AZ/external/runCASTfxn.R inst/shiny-examples/CAST_AZ/global.R
inst/shiny-examples/CAST_AZ/rsconnect/shinyapps.io/leppott/CAST_AZ.dcf
inst/shiny-examples/CAST_AZ/server.R inst/shiny-examples/CAST_AZ/ui.R
inst/shiny-examples/CAST_Map_COMID/data/df.sites.map.rda
inst/shiny-examples/CAST_Map_COMID/data/lines.flowline.proj.rda
inst/shiny-examples/CAST_Map_COMID/data/poly.smc.proj.rda
inst/shiny-examples/CAST_Map_COMID/global.R
inst/shiny-examples/CAST_Map_COMID/rsconnect/shinyapps.io/leppott/CAST_Map.dcf
inst/shiny-examples/CAST_Map_COMID/server.R inst/shiny-examples/CAST_Map_COMID/ui.R
inst/shiny-examples/CAST_Map_SiteID/data/df.sites.map.rda
inst/shiny-examples/CAST_Map_SiteID/data/lines.flowline.proj.rda
inst/shiny-examples/CAST_Map_SiteID/data/poly.smc.proj.rda
inst/shiny-examples/CAST_Map_SiteID/global.R
inst/shiny-examples/CAST_Map_SiteID/rsconnect/shinyapps.io/leppott/CAST_Map.dcf
inst/shiny-examples/CAST_Map_SiteID/rsconnect/shinyapps.io/leppott/CAST_Map_SiteID.dcf
inst/shiny-examples/CAST_Map_SiteID/server.R inst/shiny-examples/CAST_Map_SiteID/ui.R inst/shiny-examples/CAST_SMC/CASTool_CA.r
inst/shiny-examples/CAST_SMC/_data/SMCBCDist.tab
inst/shiny-examples/CAST_SMC/_data/SMCBenthicCountsFinal.tab
inst/shiny-examples/CAST_SMC/_data/SMCBenthicMasterTaxa.tab
inst/shiny-examples/CAST_SMC/_data/SMCClusters.tab
inst/shiny-examples/CAST_SMC/_data/SMCCoOccurFinal.tab
inst/shiny-examples/CAST_SMC/_data/SMCModelStressDataFinal.tab
inst/shiny-examples/CAST_SMC/_data/SMCModelStressInfoFinal.tab
inst/shiny-examples/CAST_SMC/_data/SMCSiteSummary.tab
inst/shiny-examples/CAST_SMC/_data/SMCSitesFinal.tab
inst/shiny-examples/CAST_SMC/_data/SMCStressDataFinal.tab
inst/shiny-examples/CAST_SMC/_data/SMCStressInfoFinal.tab
inst/shiny-examples/CAST_SMC/getCoOccurDataset.R inst/shiny-examples/CAST_SMC/getTimeSeq.R inst/shiny-examples/CAST_SMC/getWoE.R man/CASTfxn.Rd man/data_303d.Rd man/data_AlgMasterTaxa.Rd man/data_AlgMetrics.Rd man/data_Algcounts.Rd man/data_BMIMasterTaxa.Rd man/data_BMIMetrics.Rd man/data_BMIRelAbund.Rd man/data_BMIcounts.Rd man/data_Chem.Rd man/data_ChemInfo.Rd man/data_Cluster_Hi.Rd man/data_Cluster_Lo.Rd man/data_CoOccur_AZ_Hi.Rd man/data_CoOccur_AZ_Lo.Rd man/data_CoOccur_CA.Rd man/data_GIS_AZ_Outline.Rd man/data_GIS_Flow_HI.Rd man/data_GIS_Flow_LO.Rd man/data_ReachMod.Rd man/data_SSD.Rd man/data_SSD_generator.Rd man/data_SSD_permethrin.Rd man/data_SampSummary.Rd man/data_Sites.Rd man/getBioMatches.Rd man/getBioStressorResponses.Rd man/getChemDataSubsets.Rd man/getClusterInfo.Rd man/getCoOccur.Rd man/getElev.Rd man/getReport.Rd man/getSSDplot.Rd man/getSiteInfo.Rd man/getStressorList.Rd man/getVerifiedPredictions.Rd man/runShinyExample.Rd tests/testthat.R tests/testthat/test-SSD.R tests/testthat/test_foo.R
vignettes/.install_extras
vignettes/Analysis.Rmd vignettes/CASTfxn_Vignette.Rmd vignettes/Elevation_Vignette.Rmd
leppott/CASTfxn documentation built on Sept. 6, 2019, 11:04 p.m.

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