API for lerch-a/HaplotypR
HaplotypR, a pipeline to analyse amplicon deep sequencing genotyping data

Global functions
bindAmpliconReads Source code
calculateMismatchFrequencies Source code
callGenotype Source code
callHaplotype Source code
checkChimeras Source code
clusterReads Source code
compareDNAString Source code
createContingencyTable Source code
createFinalHaplotypTable Source code
createHaplotypOverviewTable Source code
createProject Source code
demultiplexReads Source code
extractSwarmClusterReads Source code
findChimeras Source code
flagChimera Source code
getAppOptionDevel Source code
mergeAmpliconReads Source code
plotHaplotypes Source code
plotMismatchFrequencies Source code
reclusterHaplotypesTable Source code
removePrimer Source code
renameDemultiplexedFiles Source code
runShinyApp Source code
lerch-a/HaplotypR documentation built on May 21, 2019, 5:11 a.m.