Files in lerch-a/HaplotypR

HaplotypR, a pipeline to analyse amplicon deep sequencing genotyping data

.github/workflows/R-CMD-check.yml

DESCRIPTION

LICENSE

NAMESPACE

R/appFunction.R R/callGenotype.R R/callHaplotype.R R/callHaplotypeDADA2.R R/clusterFunction.R R/filterHaplotype.R R/haplotyperProject.R R/helperFunction.R R/minION_function.R R/plotFunctions.R R/processReads.R docs/README.md

docs/_config.yml

docs/_layouts/default.html

docs/documentation/bindReads.md docs/documentation/index.md docs/documentation/makeInputFiles.md docs/documentation/makePrimerFile.md docs/documentation/mergeReads.md docs/foo.md

inst/CITATION

inst/extdata/barcode_Fwd.fasta

inst/extdata/barcode_Rev.fasta

inst/extdata/ex2/barcode_F.fasta

inst/extdata/ex2/barcode_R.fasta

inst/extdata/ex2/marker_file.txt

inst/extdata/ex2/reads2_F.fastq.gz

inst/extdata/ex2/reads2_R.fastq.gz

inst/extdata/ex2/sample_file.txt

inst/extdata/markerFile.txt

inst/extdata/readsF.fastq.gz

inst/extdata/readsR.fastq.gz

inst/extdata/sampleFile.txt

inst/shinyApp/app.R inst/shinyApp/guiHelper.R inst/shinyApp/serverHelper.R

inst/shinyApp/www/haplotypRstyle.css

vignettes/HaplotypR-refs.bib

vignettes/HaplotypR.Rnw

lerch-a/HaplotypR documentation built on July 7, 2023, 7:58 a.m.