func_phy_dist: Functional-Phylogenetic Distances (FPD)
In levisc8/Fun_Phylo_Package: Helpers to Power the Fun Phylo Shiny App
Description
Usage
Arguments
Value
Note
Author(s)
See Also
Description
Calculate hybrid functional phylogenetic distance matrices
based on the method of Cadotte et al 2013
Usage
1
func_phy_dist(FDist, PDist, phyloWeight, p, ...)
Arguments
FDist
A matrix of functional trait distances
PDist
A matrix of phylogenetic distances
phyloWeight
The phylogenetic scaling parameter a as
described in Cadotte et al 2013. A value of 1 denotes only phylogenetic
information while a value of 0 indicates only functional trait
information. The value must be between 0 and 1.
p
the power to raise each matrix to when combining the two
distance matrices.
...
Ignored here
Value
A matrix with weighted interspecific distances
Note
The function does not check to make sure names in
FDist and PDist match. Additionally, if
NAs or NaNs in the distance matrix are generated by missing data,
they will be replaced with matrix level mean distance values and
a warning message will be generated.
Author(s)
Sam Levin
See Also
levisc8/Fun_Phylo_Package documentation built on June 2, 2020, 8:41 a.m.
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Description Usage Arguments Value Note Author(s) See Also
Description
Calculate hybrid functional phylogenetic distance matrices based on the method of Cadotte et al 2013
Usage
1 | func_phy_dist(FDist, PDist, phyloWeight, p, ...)
|
Arguments
FDist |
A matrix of functional trait distances |
PDist |
A matrix of phylogenetic distances |
phyloWeight |
The phylogenetic scaling parameter a as described in Cadotte et al 2013. A value of 1 denotes only phylogenetic information while a value of 0 indicates only functional trait information. The value must be between 0 and 1. |
p |
the power to raise each matrix to when combining the two distance matrices. |
... |
Ignored here |
Value
A matrix with weighted interspecific distances
Note
The function does not check to make sure names in
FDist and PDist match. Additionally, if
NAs or NaNs in the distance matrix are generated by missing data,
they will be replaced with matrix level mean distance values and
a warning message will be generated.
Author(s)
Sam Levin
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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