sensitivity: Compute sensitivity

In levisc8/irage: Life History Analysis for Integral Projection Models

Description

Compute sensitivity

Usage

sensitivity(
  ipm,
  what = c("r_0", "lambda", "gen_t"),
  level = c("kernel", "vital_rate", "parameter"),
  subset = NA_character_,
  ...
)

## S3 method for class 'simple_di_det_ipm'
sensitivity(
  ipm,
  what = "lambda",
  level = "kernel",
  subset = NA_character_,
  n_iterations = 100,
  ...
)

## S3 method for class 'general_di_det_ipm'
sensitivity(
  ipm,
  what = "lambda",
  level = "kernel",
  subset = NA_character_,
  n_iterations = 100L,
  mega_mat,
  mega_vec,
  ...
)

Arguments

ipm	Output from make_ipm().
what	The numerator of the partial derivative for sensitivity. Possible options "lambda" (default), "r_0", and "gen_t". More will probably be added later.
level	The denominator of the partial derivative for sensitivity. "kernel" computes the model wide sensitivity surface and returns that. "vital_rate" computes lambda's sensitivity to specific vital rates, "parameter" lambda's sensitivity to each parameter. Use subset to specify a subset of vital rates or parameters to compute values for.
subset	A character vector corresponding to the "vital_rates" or "parameters" you want to compute sensitivities for. Can save time if only a few parameters or vital rates are of interest.
...	other arguments passed to methods.
n_iterations	For simple IPMs, number of times to iterate the model when computing the left and right eigenvectors.
mega_mat	A vector of names and/or 0s specifying the relationship between the kernels in the model. The names should correspond to kernel names, with 0s corresponding to sparse areas of the mega-matrix. The names can be either symbols or characters. These functions support suffix expansion as in define_k(ernel), so expressions don't need to be re-written for every combination hierarchical effects.
mega_vec	A vector of names specifying the format of the population vector. The names can be either symbols or characters.

Value

A list. Contains either kernel response surfaces, vital rate level sensitivity values, or parameter level sensitivity values. The class is always c("ipmr_sensitivity", "list") (for internal usage and plot methods).

levisc8/irage documentation built on March 6, 2020, 12:56 a.m.