Man pages for lfabreti/convenience
Convergence assessment for phylogenetic inference
| checkConvergence | Check Convergence full assessment |
| essContParam | ESS calculation for the continuous parameters |
| essSplitFreq | ESS calculation for the splits |
| ksTest | Kolmogorov-Smirnov test for the continuous parameters |
| ksThreshold | KS threshold |
| loadFiles | Load Files |
| loadMulti | Modified from RWTY |
| loadTrees | Modified from RWTY |
| makeControl | Make control |
| meanContParam | Calculates the means of the continuous parameters#' |
| plotDiffSplits | Plots the difference between splits of different runs |
| plotEssContinuous | Histogram of the ESS values |
| plotEssSplits | Histogram of the ESS values |
| plotKS | Histogram of the KS values |
| plotKSPooled | Histogram of the KS values |
| print.convenience.diag | Print method for convenience.diag |
| print.convenience.table | Print method for convenience.table |
| print.list.fails | Print method for list.fails |
| printTableContinuous | Prints the means and the ESS of the continuous parameters |
| printTableSplits | Prints the frequencies and ESS of the splits |
| readTrace | Modified from RevGadgets |
| removeBurnin | Remove burn-in |
| splitFreq | Split Frequencies |
