checkConvergence: Check Convergence full assessment

In lfabreti/convenience: Convergence assessment for phylogenetic inference

Check Convergence full assessment

Description

Check output from phylogenetic MCMC analysis for convergence diagnostics

Usage

checkConvergence(
  path = NULL,
  list_files = NULL,
  format = "revbayes",
  control = makeControl()
)

Arguments

path	Path to directory containing all files from the same analysis
list_files	List of files to check for convergence
format	The format of the phylogenetic output. Current supported formats are: "revbayes", "mb", "beast", "*beast", "phylobayes"
control	List of arguments to the function. Includes tracer (to calculate the ESS with Tracer method), burn-in, precision and names of parameters to exclude from the analysis

Value

List of type convenience.diag

Examples

## Not run: 
checkConvergence( path ,
 format = "revbayes" )

## End(Not run)

lfabreti/convenience documentation built on June 17, 2022, 8:12 a.m.