chromomap_2_shiny: ChromoMap for Shiny Gadget

In lharris421/gdexpl: Explore Genes Linked to Diseases and Diseases Linked to Genes

Description

This is the function used to produce the chromoMap in the Shiny Gadget and is not to be used outside of the gadget and thus should not be exported. Any documentation is covered in the genetic_disease_explore documentation.

Usage

chromomap_2_shiny(
  ch.files = "chromosomes.txt",
  data.files,
  title = c(),
  ch_gap = 5,
  chr_width = 6,
  chr_color = c("black"),
  labels = FALSE,
  canvas_width = 500,
  canvas_height = 520,
  anno_col = c("yellow")
)

Arguments

ch.files	Chromosome file name
data.files	filename(s) containing data to annotate on the chromosomes.
title	a character string to be used as a title in plot
ch_gap	Specifies chromosomes gap
chr_width	specify the width of each chromsome
chr_color	Specifies chromosomes color
labels	a boolean to include labels in plot
canvas_width	width of the plot
canvas_height	height of the plot
anno_col	Specifies annotation colors

lharris421/gdexpl documentation built on Dec. 23, 2019, 6:38 p.m.