compare.infections: Compare estimate COVID-19 infections & observed deaths...

In liamrevell/covid19.Explorer: A COVID-19 Explorer

Compare estimate COVID-19 infections & observed deaths between states

Description

Function to compared estimated COVID-19 infections and observed deaths through time between states.

Usage

	compare.infections(
		states=c("Massachusetts","California",NULL),
		cumulative=FALSE,
		data=list(),
		delay=20,
		ifr=0.005,
		window=7,
		smooth=TRUE,
		span=c(0.12,0.3),
		plot=TRUE,
		bg="transparent",
		xlim=c(60,366+135),
		per.capita=TRUE,
		cols=NULL,
		cdr=c("sigmoid","average"),
		...)

Arguments

states	states or jurisdictions to compare.
cumulative	show cumulative infections (logical).
data	list containing CDC data. If not supplied, function will create this object.
delay	average lag from infection to death.
ifr	infection-fatality-ratio/rate or function. If more than one value is specified, IFR is interpolated using LOESS smoothing.
window	window for moving average.
smooth	smooth estimated infections (logical).
span	values of span to be passed to loess. First value is for infections through time. Second value is for IFR if applicable.
plot	create a plot (logical).
bg	background color for plots.
xlim	x-limits for the plot.
per.capita	show values as per 1M population (logical).
cols	colors to use for plotting.
cdr	model for case detection rate (CDR) through time.
...	optional arguments.

Value

A plot.

Author(s)

Liam Revell [e-mail]

References

References here.

liamrevell/covid19.Explorer documentation built on Feb. 19, 2023, 3:09 p.m.