infections.by.state: Show distribution of estimated COVID-19 infections among...

In liamrevell/covid19.Explorer: A COVID-19 Explorer

Show distribution of estimated COVID-19 infections among states

Description

Function to graph the distribution of estimated COVID-19 infections among states through time.

Usage

	infections.by.state(states=NULL,
		cumulative=FALSE,
		stacked=TRUE,
		data=list(),
		delay=20,
		ifr=0.005,
		window=7,
		smooth=TRUE,
		span=c(0.12,0.3),
		show.ifr=TRUE,
		bg="transparent",
		xlim=c(60,366+135),
		show.as.percent=FALSE,
		cdr=c("sigmoid","average"),
		...)

Arguments

states	states or jurisdictions to plot.
cumulative	show cumulative infections (logical).
stacked	show infections stacked (logical).
data	list containing CDC data. If not supplied, function will create this object.
delay	average lag from infection to death.
ifr	infection-fatality-ratio/rate or function. If more than one value is specified, IFR is interpolated using LOESS smoothing.
window	window for moving average.
smooth	smooth estimated infections (logical).
span	values of span to be passed to loess. First value is for infections through time. Second value is for IFR if applicable.
show.ifr	show modeled IFR (logical).
bg	background color for plots.
xlim	x-limits for the plot.
show.as.percent	show as a percent of all infections (logical).
cdr	model for case detection rate (CDR) through time.
...	optional arguments.

Value

A plot.

Author(s)

Liam Revell [e-mail]

References

References here.

liamrevell/covid19.Explorer documentation built on Feb. 19, 2023, 3:09 p.m.