reorderSimmap: Reorder edges of a '"simmap"' tree

View source: R/utilities.R

reorderSimmapR Documentation

Reorder edges of a "simmap" tree

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

reorderSimmap(tree, order="cladewise", index.only=FALSE, ...)

Arguments

tree

a modified object of class "phylo".

order

"cladewise", "pruningwise", or any other allowable order permitted by reorder.phylo.

index.only

logical value indicating whether only an index should be returned.

...

other arguments.

Value

A modified object of class "phylo".

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

reorder.phylo, plotSimmap


liamrevell/phytools documentation built on March 4, 2024, 3:27 a.m.