API for lian0090/SKAT2
SKAT test for two or more random components
| Global functions | |
|---|---|
| .onUnload | Source code |
| Beta.Weights | Source code |
| FaST.add | Source code |
| GWAS | Source code |
| Get_BetaMAF | Source code |
| Get_CausalSNPs | Source code |
| Get_Davies_PVal | Source code |
| Get_Lambda | Source code |
| Get_Lambda_U_From_Z | Source code |
| Get_Liu_PVal | Source code |
| Get_Liu_PVal.MOD | Source code |
| Get_Liu_PVal.MOD.Lambda | Source code |
| Get_Liu_PVal.MOD.Lambda.Zero | Source code |
| Get_Liu_Params | Source code |
| Get_Liu_Params_Mod | Source code |
| Get_Liu_Params_Mod_Lambda | Source code |
| Get_Logistic_Weights | Source code |
| Get_Logistic_Weights_MAF | Source code |
| Get_MAF | Source code |
| Get_Matrix_Square.1 | Source code |
| Get_PValue | Source code |
| Get_PValue.Lambda | Source code |
| Get_Resampling_Bin | Source code |
| Get_Satterthwaite | Source code |
| Get_testSNPsMAF | Source code |
| Impute | Source code |
| LHSForm | Source code |
| Meff | Source code |
| Meff.lambda | Source code |
| RHSForm | Source code |
| SKAT_Get_Polymorphic_SNP | Source code |
| SKAT_davies | Source code |
| SKAT_liu | Source code |
| SKAT_liu.MOD | Source code |
| `RHSForm<-` | Source code |
| `[.gds.class` | Source code |
| asCall | Source code |
| checkNA | Source code |
| checkVar | Source code |
| colmult | Source code |
| findCallPattern | Source code |
| findTrueTerms | Source code |
| findterms | Source code |
| fitNULL | Source code |
| fitNULL.FaST | Source code |
| getDL | Source code |
| getEigenG | Source code |
| getFaST | Source code |
| getPower | Source code |
| getPower.singleSNP | Source code |
| getPower.window | Source code |
| getSetsSNPID | Source code |
| getSetsSNPID.StartEnd | Source code |
| get_results | Source code |
| neg2Log | Source code |
| noCallPattern | Source code |
| print.GWAS | Source code |
| print.lmm | Source code |
| readLinesListf | Source code |
| replaceTerm | Source code |
| simu.XF_R | Source code |
| simu.XF_StN | Source code |
| simuBeta | Source code |
| simuPower | Source code |
| simu_ug.QTL | Source code |
| simu_ug.eigenG | Source code |
| subflags | Source code |
| sweep_prod | Source code |
| testX | Source code |
| testZ | Source code |
| tr | Source code |
| updateFaST.X | Source code |
| updateFaST.Ztest | Source code |
| updateFaST.Zw | Source code |
| updatefitNULLFaST | Source code |
