Man pages for lianos/sparrow.shiny
Provides shiny modules to visualize sparrow results
| constructGseaResultTable | Builds the table of GSEA statistics to present to the user. |
| exampleUISetup | Generates the CSS/UI setup to reduce code required in... |
| explore | Interactively explore a SparrowResult via a shiny app |
| feature-link-functions | Transform a column in feature table to web link for that... |
| geneSetContrastView | A module to encapsulate browsing differential statistics of a... |
| GeneSetDb.ReactiveGeneSetDb | Returns the filtered unreactive GeneSetDb from the... |
| geneSetSelect | Create a selectize input to select a gene set from a sparrow... |
| initialized | Tests if a module is initialized |
| mgGeneSetSummaryByGene | A module to show a tabular view of genesets that contain... |
| mgResultFilter | A module that allows users to select which GSEA results to... |
| mgTableBrowser | Displays a an interactive table of GSEA statistics from an... |
| mgVolcano | A module to visualize a volcano plot. |
| reactiveGeneSetDb | A UI for a GeneSetDb that enables users to select gene sets... |
| reactiveGeneSetSelect | A gene set selector that enables users to pre-filter universe... |
| renderFeatureStatsDataTable | Create a DT::datatable of feature level statistics for use in... |
| renderGseaResultTableDataTable | Creates a DT::datatable of geneset level GSEA results for use... |
| round.dt | Rounds every numeric column of a data.table to given... |
| roundDT | Rounds all of the numeric columns of a DT |
| SparrowResultContainer | A wrapper for a SparrowResult that promotes internals of... |
| summaryHTMLTable.sparrow | Creates an HTML-ized version of 'tabuleResults' |
| unselected | Checks if the return value from a selectInput looks like it's... |
| userDefinedGeneSetDb | Creates a GeneSetDb from a user-specfied gene set definition... |
