renderGseaResultTableDataTable: Creates a DT::datatable of geneset level GSEA results for use...

In lianos/sparrow.shiny: Provides shiny modules to visualize sparrow results

Creates a DT::datatable of geneset level GSEA results for use in shiny bits.

Description

This function is closely tied to the exact output of the GSEA methods from the [sparrow::seas()].

Usage

renderGseaResultTableDataTable(x, method, mg, digits = 3)

Arguments

x	The set of GSEA statistics generated from from [constructGseaResultTable()]
method	the GSEA method being used fo rdisplay
mg	The 'SparrowResult' object. This is used swap in the URL links for genesets using [sparrow::geneSetURL()].
digits	the number of digits to round numer columns to.

Value

A [DT::datatable()] for display

Examples

sres <- sparrow::exampleSparrowResult()
method <- sparrow::resultNames(sres)[1L]
stable <- constructGseaResultTable(sres, method)
renderGseaResultTableDataTable(stable, method, sres, digits = 2)

lianos/sparrow.shiny documentation built on Oct. 12, 2023, 2:43 a.m.