reactiveGeneSetSelect: A gene set selector that enables users to pre-filter universe...

In lianos/sparrow.shiny: Provides shiny modules to visualize sparrow results

A gene set selector that enables users to pre-filter universe to choose from

Description

This provides the user to pick a single gene set from a GeneSetDb collection. To help the user find the gene set, the user can select which collections and gene set sizes that serve as the universe of potential gene sets to pick from in a GeneSetDb.

Usage

reactiveGeneSetSelect(input, output, session, gdb = NULL, ...)

reactiveGeneSetSelectUI(id, label = NULL, dropdown_width = "350px", ...)

Arguments

input, output, session	shiny module bits
gdb	A [reactiveGeneSetDb()] module, or 'NULL'
...	pass through (not used)
id	the id/namespace for the module
label	passed to [shiny::selectizeInput()]
dropdown_width	the width of the dropdown element in pixels

Value

A list of geneset info and membersihp

Functions

• reactiveGeneSetSelectUI: The UI function

Examples

sres <- sparrow::exampleSparrowResult()
gdb <- sparrow::geneSetDb(sres)
app <- shiny::shinyApp(
  ui = shiny::shinyUI(shiny::fluidPage(
    exampleUISetup(),
    title = "Gene set selctor",
    reactiveGeneSetSelectUI("mod"))),
  server = function(input, output, session) {
    shiny::callModule(reactiveGeneSetSelect, "mod", gdb)
  })
if (interactive()) {
  shiny::runApp(app)
}

lianos/sparrow.shiny documentation built on Oct. 12, 2023, 2:43 a.m.