SparrowResult: A SparrowResult object holds the results from a...
In lianos/sparrow: Take command of set enrichment analyses through a unified interface
SparrowResult-class R Documentation
A SparrowResult object holds the results from a sparrow::seas() call.
Description
A call to seas() will produce analyses for an
arbitrary number of GSEA methods, the results of which will be stored and
accessible here using the result(), results(), and resultNames().
In addition, the GeneSetDb() used for the analysis is accessible
via geneSetDb(), and the results from the differential
expression analysis is available via logFC().
Visualizing results of a geneset based analysis also are functions that
operate over a SparrowResult object, for instance see the
iplot() and the sparrow.shiny package.
Slots
gsdThe GeneSetDb() this analysis was run over
resultsThe list of individual results generated by each of the
GSEA methods that were run.
logFCThe differential expression statistics for each individual
feature measured in the experiment.
lianos/sparrow documentation built on Feb. 5, 2024, 2:58 p.m.
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| SparrowResult-class | R Documentation |
A SparrowResult object holds the results from a sparrow::seas() call.
Description
A call to seas() will produce analyses for an
arbitrary number of GSEA methods, the results of which will be stored and
accessible here using the result(), results(), and resultNames().
In addition, the GeneSetDb() used for the analysis is accessible
via geneSetDb(), and the results from the differential
expression analysis is available via logFC().
Visualizing results of a geneset based analysis also are functions that
operate over a SparrowResult object, for instance see the
iplot() and the sparrow.shiny package.
Slots
gsdThe
GeneSetDb()this analysis was run overresultsThe list of individual results generated by each of the GSEA methods that were run.
logFCThe differential expression statistics for each individual feature measured in the experiment.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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