randomGeneSetDb: Generates a fake GeneSetDb by sampling from features in a...

In lianos/sparrow: Take command of set enrichment analyses through a unified interface

Generates a fake GeneSetDb by sampling from features in a seas input.

Description

I wrote this because initial fetching from msigdbr can be slow, and also having some weird crashes in the unit tests of bioc3.14-devel.

Usage

randomGeneSetDb(x, n = 10, bias = NULL, ...)

Arguments

x	an input container to seas()
n	number of genesets
bias	column in x to bias the geneset creation by
...	pass through args

Details

This is a helper function for development, and shouldn't be used by normal users of this package.

Value

A randomly generated GeneSetDb you can use against x for testing.

Examples

gdb.rando <- randomGeneSetDb(exampleDgeResult(), 10, bias = "t")

lianos/sparrow documentation built on Aug. 8, 2024, 9:01 a.m.