hyperGtestTerms: Hypergeometric Tests for GO/KEGG test
In lihuamei/Biotools: Bioinformatics tools for data analysis.
Description
Usage
Arguments
Value
Description
Given GeneID2Path,Path2GeneID, diff_gene,universeGeneIds, this function will compute Hypergeometric Tests for each path (GO/KEGG),
It can't hold on the structure of the GO graph, just a simple path.
Usage
1
hyperGtestTerms(diffExprGenes, geneID2Path, path2GeneID, universeGeneIds)
Arguments
diffExprGenes
a vector which contain the significantly DEG list.
geneID2Path
a list which one entrez gene id to multiple pathway id.
path2GeneID
a list which one pathway id to multiple entrezgene id.
universeGeneIds
a vector which contain the backgroud gene list, probably 20,000 genes.
Value
a data.frame, each row is a Hypergeometric Tests result for each pathway.
lihuamei/Biotools documentation built on July 15, 2020, 1:50 a.m.
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Description Usage Arguments Value
Description
Given GeneID2Path,Path2GeneID, diff_gene,universeGeneIds, this function will compute Hypergeometric Tests for each path (GO/KEGG), It can't hold on the structure of the GO graph, just a simple path.
Usage
1 | hyperGtestTerms(diffExprGenes, geneID2Path, path2GeneID, universeGeneIds)
|
Arguments
diffExprGenes |
a vector which contain the significantly DEG list. |
geneID2Path |
a list which one entrez gene id to multiple pathway id. |
path2GeneID |
a list which one pathway id to multiple entrezgene id. |
universeGeneIds |
a vector which contain the backgroud gene list, probably 20,000 genes. |
Value
a data.frame, each row is a Hypergeometric Tests result for each pathway.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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