Man pages for lilin-yang/glacier
Gene List Annotation, Calculation and Illustration of Enrichment in R
| calculate | Calculate overlap statistics |
| calculate_post | Finish calculating overlap statistics |
| calculate_pre | Begin calculating overlap statistics |
| compute | Perform computations on imported and processed data |
| explore_annotation | Find an annotation's associated gene sets and genes |
| import_annotations | Import delimited annotation file into glacier-specific format |
| import_annotations_file | Process tibble of annotation file contents |
| import_database | Import delimited database file into glacier-specific format |
| import_database_file | Process tibble of database file contents |
| import_delim_file | Process tibble of file contents |
| import_delim_path | Read delimited files into tibble |
| import_msigdb | Import MSigDB XML database file into glacier-specific format |
| plot_overlap | Plot gene-annotation matches as heatmap |
| plot_stats | Plot overlap statistics as a bar graph |
| process_annotations | Process annotations |
| process_database | Process database |
| process_input_seurat | Extract differentially expressed genes from Seurat object |
| process_input_text | Process text input |
| webstart | Launch web interface |
