process_database: Process database

In lilin-yang/glacier: Gene List Annotation, Calculation and Illustration of Enrichment in R

Description

Choose database category and organism for use in analysis.

Usage

process_database(data, categories = FALSE, organisms = FALSE)

Arguments

data	output of import_database or import_msigdb
categories	optional: categories to include; default all
organisms	optional: organisms to include; default all

Value

gs_genes list: names: gene set names vector: genes

gs_info tibble: gene set information

genes vector: list of genes

Examples

## Not run: 
data_path <- system.file("extdata", "ex_data.csv", package = "glacier")
data <- import_database(data_path, ",", FALSE, c(2, 4), 0)

data_proc <- process_database(data, "Not assigned", "Not assigned")

## End(Not run)

lilin-yang/glacier documentation built on Oct. 3, 2020, 8:06 a.m.