calculate_post: Finish calculating overlap statistics

In lilin-yang/glacier: Gene List Annotation, Calculation and Illustration of Enrichment in R

Description

Finish calculating overlap statistics

Usage

calculate_post(stats_pre, input_size, universe)

Arguments

stats_pre	value from calculate_pre
input_size	number of genes in input
universe	number of genes in universe

Value

tibble: overlap statistics

Examples

## Not run: 
anno_path <- system.file("extdata", "ex_anno.csv", package = "glacier")
data_path <- system.file("extdata", "ex_data.csv", package = "glacier")
anno <- import_annotations(anno_path, ",", TRUE, c(2, 4), 5)
data <- import_database(data_path, ",", FALSE, c(2, 4), 0)
info <- anno[c("name", "info")]

anno_proc <- process_annotations(anno, info, "file")
data_proc <- process_database(data, "Not assigned", "Not assigned")
input <- process_input_text("FCN1 0.1 FTL 0.8 CLU 0.05")
calc_pre <- calculate_pre(input, anno_proc$annos, anno_proc$gs_annos,
                          data_proc$gs_genes)
calc <- calculate_post(calc_pre$stats_pre, nrow(input), 10000)

## End(Not run)

lilin-yang/glacier documentation built on Oct. 3, 2020, 8:06 a.m.