Man pages for lin-lab/SKAT
SNP-Set (Sequence) Kernel Association Test
| Close_SSD | Close SNP set data file (SSD) |
| Generate_SSD_SetID | Generate SNP set data file (SSD) |
| Get_ENT | Estimate the effective number of tests for Bonferroni... |
| Get_Genotypes_SSD | Get Genotype data from SSD file |
| Get_Logistic_Weights | Get the logistic weight |
| Get_RequiredSampleSize | Get the required sample size to achieve the given power |
| Get_Resampling_Pvalue | Compute a resampling p-value |
| Open_SSD | Open SNP set data file (SSD) |
| Power_Continuous | Power calculation, continuous traits |
| Power_Logistic | Power calculation, Dichotomous traits |
| QQPlot_Adj | Adjusted QQ plot |
| Read_Plink_FAM | Read Plink FAM and covariates files |
| Read_SNP_WeightFile | Read a file with custom weights |
| Resampling_FWER | Obtain significant SNP sets after controlling family wise... |
| SKAT | SNP-set (Sequence) Kernel Association Test |
| SKATBinary | SNP set test for binary traits with asymptotic and efficient... |
| SKATBinary.example | Example data for SKAT |
| SKATBinary_Single | Single variant tests for binary traits with Firth and... |
| SKAT_ChrX | SNP-set (Sequence) Kernel Association Test for X chromosome... |
| SKAT_CommonRare | SKAT for the combined effect of common and rare variants |
| SKAT.example | Example data for SKAT |
| SKAT.example.ChrX | Example data for SKAT |
| SKAT.fam.example | Example data for SKAT_NULL_emmaX |
| SKAT.haplotypes | Haplotype dataset for power calculation |
| SKAT_NULL_emmaX | Get parameters and residuals from the null model with... |
| SKAT_Null_Model | Get parameters and residuals from the NULL model |
| SKAT_Null_Model_MomentAdjust | Get parameters and residuals from the NULL model for small... |
| SKAT.SSD.All | SNP-set Kernel Association Test |
| SSD_FILE_OPEN | Internal variables for SSD |
