Get_Genotypes_SSD: Get Genotype data from SSD file
In lin-lab/SKAT: SNP-Set (Sequence) Kernel Association Test
Description
Usage
Arguments
Value
Author(s)
Description
Read a SSD file and return a genotype matrix.
Usage
1
2
Get_Genotypes_SSD(SSD_INFO, Set_Index, is_ID = FALSE)
Arguments
SSD_INFO
SSD_INFO object returned from Open_SSD.
Set_Index
a numeric value of Set index. The set index of each set can be found from SetInfo object of SSD.INFO.
is_ID
a logical value indicating whether to read SNP ID (default=FALSE). If TRUE, it reads SNP IDs and use them as column names.
Value
A genotype matrix with n rows and m columns, where n is the number of samples and m is the number of SNPs.
Author(s)
Seunggeun Lee, Larisa Miropolsky
lin-lab/SKAT documentation built on May 29, 2019, 3:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Read a SSD file and return a genotype matrix.
Usage
1 2 | Get_Genotypes_SSD(SSD_INFO, Set_Index, is_ID = FALSE)
|
Arguments
SSD_INFO |
SSD_INFO object returned from Open_SSD. |
Set_Index |
a numeric value of Set index. The set index of each set can be found from SetInfo object of SSD.INFO. |
is_ID |
a logical value indicating whether to read SNP ID (default=FALSE). If TRUE, it reads SNP IDs and use them as column names. |
Value
A genotype matrix with n rows and m columns, where n is the number of samples and m is the number of SNPs.
Author(s)
Seunggeun Lee, Larisa Miropolsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.