gandal_df: Gandal et al. results

In linnykos/eSVD2: eSVD2 for performing the eSVD-DE for cohort-wide differential expression analysis

Gandal et al. results

Description

From https://www.nature.com/articles/s41586-022-05377-7, Supplementary Data 3 (i.e., 41586_2022_5377_MOESM5_ESM.xlsx)

Usage

gandal_df

Format

## 'gandal_df' A data frame with 24836 rows (genes) and 3 columns:

external_gene_name

Gene symbol

WholeCortex_ASD_logFC

Estimated log fold change

WholeCortex_ASD_FDR

FDR q-value

Source

<https://www.nature.com/articles/s41586-022-05377-7>

Examples

## Not run: 
# How the data was loaded
df <- openxlsx::read.xlsx("/Users/kevinlin/Downloads/41586_2022_5377_MOESM5_ESM.xlsx",
                          sheet = "DEGene_Statistics")
gandal_df <- df[,c("external_gene_name", "WholeCortex_ASD_logFC", "WholeCortex_ASD_FDR")]
usethis::use_data(gandal_df)

## End(Not run)

linnykos/eSVD2 documentation built on July 17, 2024, 12:01 a.m.