generate_data: Generate data

In linnykos/eSVD2: eSVD2 for performing the eSVD-DE for cohort-wide differential expression analysis

Generate data

Description

Generate data

Usage

generate_data(
  nat_mat,
  family,
  nuisance_param_vec = NA,
  library_size_vec = 1,
  tol = 0.001
)

Arguments

nat_mat	An n\times p matrix of natural parameters, where n rows represent cells and p columns represent genes.
family	A character string, one of "gaussian", "exponential", "poisson", "neg_binom", "curved_gaussian", and "bernoulli".
nuisance_param_vec	Either NA or a single numeric or a length-p vector of numerics representing nuisance parameters (for family = "neg_binom" and family = "curved_gausian"). It is only required if family %in% c("neg_binom", "curved_gaussian").
library_size_vec	Either NA or a length-n vector of numerics
tol	Small positive value to determine the smallest possible value in the output matrix, useful for only family = "curved_gaussian".

Value

The generated data matrix

linnykos/eSVD2 documentation built on July 17, 2024, 12:01 a.m.