import_FAO: Importing data from Epidemium

In linogaliana/OpenCancer: Build statistical models to understand cancer causes

Description

These functions allow you to import FAO, World Bank, ILO data and training data from your computer or directly from the internet

Usage

import_FAO(path = getwd(), filename = "Faostat_Data.csv", fromURL = FALSE,
  url = "http://qa.epidemium.cc/data/epidemiology_dataset/fao_data/Faostat_Data.csv",
  colstokeep = 1:10, fill.Ethiopia = T)

import_WB(path = getwd(), filename = "WorldBank_Data.csv",
  fromURL = FALSE,
  url = "http://qa.epidemium.cc/data/epidemiology_dataset/world_bank_data/WorldBank_Data.csv",
  colstokeep = 1:10)

import_ILO(path = getwd(), filename = "Ilostat_Data.csv", fromURL = FALSE,
  url = "http://qa.epidemium.cc/data/epidemiology_dataset/ilo_data/Ilostat_Data.csv",
  colstokeep = 1:10)

import_training(path = getwd(), filename = "training.csv",
  fromURL = FALSE,
  url = "http://qa.epidemium.cc/data/incidence_dataset/2017-10-10_dataset_core/training.txt",
  colstokeep = 1:10, cancercode = "C18")

Arguments

path	The path where the file can be found (ignored if file is loaded from the web)
filename	Name of the file with extension (csv required)
fromURL	Boolean indicating whether the file should be loaded from computer (fromURL = FALSE) or internet ((fromURL = TRUE))
url	The url where the file can be found (ignored if fromURL = FALSE)
colstokeep	A sequence indicating which columns to keep. If NULL the whole dataframe is returned
fill.Ethiopia	Specific to import_FAO. Boolean indicating whether we should fill Ethiopia data with Ethiopia PDR data
cancercode	Code for cancer. Default is 'C18' that is colon cancer

Value

A tibble with requested data

Warning

Downloading from URL can be very long, it is recommended to load from computer

Examples

## Not run: 
df_FAO <- import_FAO(getwd(), colstokeep = 1:10)
df_WB  <- import_WB(fromURL = T, colstokeep = 1:6)
df_ILO <- import_ILO(paste0(getwd(),"/other"))
df_training <- import_training(path = datadir, colstokeep = NULL)
## End(Not run)

linogaliana/OpenCancer documentation built on May 30, 2019, 3:43 p.m.