survtab: Lisa's Survival Summary Table

In lisaerein/nicesurv: This package creates a nice summary tables and plots for survival analysis

Lisa's Survival Summary Table

Description

This function creates a summary table from a survfit object including survival estimates with CIs, number of events, and number at risk. It returns a dataframe and prints a table using kable or htmlTable.

Usage

survtab(
  sfit,
  times,
  timelab = "Time",
  groups = NA,
  grlabs = NA,
  surv.dec = 2,
  perc = FALSE,
  color = "#EEEEEE",
  printorig = TRUE,
  kable = TRUE,
  htmlTable = FALSE,
  flextable = TRUE
)

Arguments

sfit	Survfit object (REQUIRED).
times	Numeric vector of times for survival estimates (REQUIRED).
timelab	Character label for time-points. Default = "Time".
groups	Character vector for groups as listed in dataset. Default = NA (no groups).
grlabs	Character vector for group names, must be in same order as groups. Default = NA (no groups or use group levels from dataset).
surv.dec	Number of decimal places to report for survival estimates. Default = 2.
perc	Logical indicator to report survival estimates as percentages. Default = FALSE.
color	Character Hex color to use for htmlTable striping. Default = "#EEEEEE" (light grey).
printorig	Logical indicator to print original summary of survfit object for checking purposes. Default = TRUE.
kable	Logical. Indicator to use kable to display table. Default = FALSE
htmlTable	Logical. Indicator to use htmlTable package to display table instead of kable Default = FALSE.
flextable	Logical. Indivator to use flextable to print table. Default = TRUE.

lisaerein/nicesurv documentation built on Dec. 9, 2024, 12:17 a.m.