R/data.R

In lishensuo/M2D: find Molecule(s) to Disease by reverse transcriptome

#' goegs
#'
#' a list of GO terms gene composition(ENTREZID format)
#'
#' @examples
#' goegs[[1]]
"goegs"



#' egSymbols
#'
#' a list of gene names(ENTREZID & SYMBOL format mapping)
#'
#' @examples
#' head(egSymbols)
"egSymbols"


#' hsGO_BP
#'
#' DATA for Semantic Similarity calculation
#'
#' @examples
#' hsGO_BP
"hsGO_BP"


#' find_disease_pw_result
#'
#' demo result of function: find_disease_pw()
#'
#' @examples
#' find_disease_pw_result
"find_disease_pw_result"


#' merge_pw_deg_result
#'
#' demo result of function: merge_pw_deg()
#'
#' @examples
#' head(merge_pw_deg_result)
"merge_pw_deg_result"


#' score_RRS_result
#'
#' demo result of function: score_RRS()
#'
#' @examples
#' head(score_RRS_result)
"score_RRS_result"



#' demo_gsea_df_all
#'
#' demo gsea_df_all for saving time when running examples
#'
#' @examples
#' demo_gsea_df_all
"demo_gsea_df_all"


#' gsea_disease_set_result
#'
#' demo result of function: gsea_disease_set()
#'
#' @examples
#' gsea_disease_set_result
"gsea_disease_set_result"

#' get_Formula_result
#'
#' demo result of function: get_Formula()
#'
#' @examples
#' get_Formula_result
"get_Formula_result"