Man pages for liuwd15/tomoda
Tomo-seq data analysis
| corHeatmap | Correlation heatmap of sections |
| createTomo | Create an object representing tomo-seq data |
| embedPlot | Embedding plot for sections |
| expHeatmap | Expression heatmap |
| findPeak | Find peak in a vector |
| findPeakGene | Find peak genes |
| geneCorHeatmap | Correlation heatmap of genes |
| geneEmbedPlot | Embedding plot for genes |
| hierarchClust | Hierarchical clustering across sections |
| kmeansClust | K-Means clustering across sections |
| linePlot | Line plot for expression traces |
| normalizeTomo | Normalize data |
| runPCA | Perform PCA |
| runTSNE | Perform TSNE |
| runUMAP | Perform UMAP |
| scaleTomo | Scale data |
| tomoMatrix | Create an object from matrix |
| tomoSummarizedExperiment | Create an object from SummarizedExperiment |
| zh.data | A raw read count matrix of zebrafish injured heart. |
