scaleTomo: Scale data

In liuwd15/tomoda: Tomo-seq data analysis

Scale data

Description

Scale the normalized read count in a SummarizedExperiment object.

Usage

scaleTomo(object)

Arguments

object

A SummarizedExperiment object.

Details

This function should be run for SummarizedExperiment object with normalized read count matrix. The normalized read counts of each gene are subjected to Z score transformation across sections.

Value

A SummarizedExperiment object with scaled read count matrix saved in assay 'scaled'.

Examples

data(zh.data)
zh <- createTomo(zh.data, scale=FALSE)
zh <- scaleTomo(zh)

liuwd15/tomoda documentation built on March 29, 2022, 1:09 a.m.